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Package: plotly.microbiome 0.0.9003

plotly.microbiome: Helper Functions for Plotly Graphs in Microbiome Work

Helper functions for nice interactive plots from phyloseq and other workflows.

Authors:Lindsay V. Clark [aut, cre]

plotly.microbiome_0.0.9003.tar.gz
plotly.microbiome_0.0.9003.zip(r-4.7)plotly.microbiome_0.0.9003.zip(r-4.6)plotly.microbiome_0.0.9003.zip(r-4.5)
plotly.microbiome_0.0.9003.tgz(r-4.6-any)plotly.microbiome_0.0.9003.tgz(r-4.5-any)
plotly.microbiome_0.0.9003.tar.gz(r-4.7-any)plotly.microbiome_0.0.9003.tar.gz(r-4.6-any)
plotly.microbiome_0.0.9003.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
plotly.microbiome/json (API)

# Install 'plotly.microbiome' in R:

install.packages('plotly.microbiome', repos = c('https://lvclark.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hpcbio/plotly_microbiome/issues

On CRAN:

2.74 score 11 scripts 163 mentions 4 exports 91 dependencies

Last updated from:4c9fd92157. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	259
source / vignettes	OK	256
linux-release-x86_64	OK	232
macos-release-arm64	OK	163
macos-oldrel-arm64	OK	169
windows-devel	OK	192
windows-release	OK	202
windows-oldrel	OK	198
wasm-release	OK	145

Exports:beta_diversity_3d composition_df findnonmissing make_taxa_labels

Dependencies:abind askpass base64enc Biobase BiocGenerics bslib cachem cli colorspace cowplot cpp11 crosstalk curl data.table DelayedArray digest dittoSeq dplyr evaluate farver fastmap fontawesome fs generics GenomicRanges ggplot2 ggrepel ggridges glue gridExtra gtable highr htmltools htmlwidgets httr IRanges isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl otel pheatmap pillar pkgconfig plotly plyr promises purrr R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown S4Arrays S4Vectors S7 sass scales Seqinfo SingleCellExperiment SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex utf8 vctrs viridis viridisLite withr xfun XVector yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Draw 3D Scatterplot of Beta Diversity	beta_diversity_3d beta_diversity_3d.data.frame beta_diversity_3d.MDS beta_diversity_3d.monoMDS beta_diversity_3d.pcoa
Prepare a Data Frame for Composition Plots	composition_df
Identify Non-Missing Taxonomic Labels	findnonmissing
Create a Label for Each Taxon	make_taxa_labels