Package: plotly.microbiome 0.0.9003
plotly.microbiome: Helper Functions for Plotly Graphs in Microbiome Work
Helper functions for nice interactive plots from phyloseq and other workflows.
Authors:
plotly.microbiome_0.0.9003.tar.gz
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plotly.microbiome.pdf |plotly.microbiome.html✨
plotly.microbiome/json (API)
| # Install 'plotly.microbiome' in R: |
| install.packages('plotly.microbiome', repos = c('https://lvclark.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hpcbio/plotly_microbiome/issues
Last updated 3 years agofrom:4c9fd92157. Checks:OK: 6 WARNING: 1. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 18 2024 |
| R-4.5-win | OK | Nov 18 2024 |
| R-4.5-linux | WARNING | Nov 18 2024 |
| R-4.4-win | OK | Nov 18 2024 |
| R-4.4-mac | OK | Nov 18 2024 |
| R-4.3-win | OK | Nov 18 2024 |
| R-4.3-mac | OK | Nov 18 2024 |
Exports:beta_diversity_3dcomposition_dffindnonmissingmake_taxa_labels
Dependencies:abindaskpassbase64encBiobaseBiocGenericsbslibcachemclicolorspacecowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydigestdittoSeqdplyrevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelggridgesgluegridExtragtablehighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpheatmappillarpkgconfigplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownS4ArraysS4VectorssassscalesSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewithrxfunXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Draw 3D Scatterplot of Beta Diversity | beta_diversity_3d beta_diversity_3d.data.frame beta_diversity_3d.MDS beta_diversity_3d.monoMDS beta_diversity_3d.pcoa |
| Prepare a Data Frame for Composition Plots | composition_df |
| Identify Non-Missing Taxonomic Labels | findnonmissing |
| Create a Label for Each Taxon | make_taxa_labels |
