Introduction | Filtering | Samples | Markers | Genotype calling | Analyses with adegenet | Discriminant analysis of principal components (DAPC) | Spatial principal coordinates analysis (sPCA) | Mantel test | Export of genotypes to adegenet | Visualization with UMAP | Analysis of molecular variance (AMOVA) using pegas | Differentiation statistics using polysat | Export to Structure | Did I miss anything?
Package: polyRADtutorials 0.1
polyRADtutorials: Supplementary Tutorials for polyRAD
Additional tutorials for polyRAD that are not included in its package vignettes due to file size, computational time, and/or package dependencies.
Authors:
polyRADtutorials_0.1.tar.gz
polyRADtutorials_0.1.zip(r-4.7)polyRADtutorials_0.1.zip(r-4.6)polyRADtutorials_0.1.zip(r-4.5)
polyRADtutorials_0.1.tgz(r-4.6-any)polyRADtutorials_0.1.tgz(r-4.5-any)
polyRADtutorials_0.1.tar.gz(r-4.7-any)polyRADtutorials_0.1.tar.gz(r-4.6-any)
polyRADtutorials_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
polyRADtutorials/json (API)
| # Install 'polyRADtutorials' in R: |
| install.packages('polyRADtutorials', repos = c('https://lvclark.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lvclark/polyradtutorials/issues
Datasets:
- Msa_4x_chr3 - Read depth data for tetraploid _Miscanthus sacchariflorus_ on chromosome 3
- Msa_latlong - Collection locations for _Miscanthus sacchariflorus_
Last updated from:47f81b1769. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 145 | ||
| source / vignettes | OK | 417 | ||
| linux-release-x86_64 | NOTE | 145 | ||
| macos-release-arm64 | NOTE | 125 | ||
| macos-oldrel-arm64 | NOTE | 86 | ||
| windows-devel | NOTE | 102 | ||
| windows-release | NOTE | 107 | ||
| windows-oldrel | NOTE | 83 | ||
| wasm-release | OK | 148 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Read depth data for tetraploid _Miscanthus sacchariflorus_ on chromosome 3 | Msa_4x_chr3 |
| Collection locations for _Miscanthus sacchariflorus_ | Msa_latlong |
